| Jackson State University | UTC Name: Institute for Multimodal Transportation |
| Theme: Managing Metropolitan Mobility | |
| Funding: FY 2006-2007-$550,000; FY 2008-2009-$650,000 | |
| Morgan State University | UTC Name: National Transportation Center |
| Theme: Transportation: A Key to Human and Economic Development | |
| Funding: FY 2006 – FY 2009 - $1,000,000 | |
| North Dakota State University | UTC Name: Small Urban and Rural Transit Center |
| Theme: The Enhancement of Personal Mobility in Small Urban and Rural Areas | |
| Funding: FY 2006 – FY 2007 - $400,000 | |
| Texas A&M University – Texas Transportation Institute | UTC Name: University Transportation Center for Mobility |
| Theme: Improving the Quality of Life by Enhancing Mobility | |
| Funding: FY2006 –FY 2009 - $1,500,000 | |
| University of Alabama – Birmingham | UTC Name: UAB University Transportation Center |
| Theme: Traffic Safety and Injury Control | |
| Funding: FY 2006 – FY 2007-$450,000; FY 2008 – FY 2009-$550,000 | |
| University Of Alabama – Tuscaloosa | UTC Name: University Transportation Center for Alabama |
| Theme: Management and Safety of Transportation Systems | |
| Funding: FY 2006 – FY 2007-$550,000; FY 2008 – FY 2009- $650,000 | |
| University of Denver Mississippi State University | UTC Name: National Center for Intermodal Transportation |
| Theme: To promote the development of a safe and efficient national intermodal transportation system | |
| Funding: FY 2006 – FY 2007 - $550,000; FY 2008- FY 2009- $650,000 | |
| University of Tennessee – Knoxville | UTC Name: National Transportation Research Center at Oak Ridge National Laboratory |
| Theme: Heavy Vehicle, Safety, Efficiency, and Security | |
| Funding: FY 2006 – FY 2009- $2,000,000 |